Your first problem is blow outs. There is no mercy rule in this state which makes going to some of these already decided games to officiate dreadful. There is no reason to play a full 80 minute game when a team is already down 5-0 15 minutes into the match.
Second is the overall culture of H.S. school soccer in South Carolina. I asked the away coach in one match who was killing the other team if he wouldn't mind cutting it short. He argued with me that his fans came from so far away (10 miles) to see a free game. There is the problem, the game is not for your parents, fans or coaches, its for the players. I tried to remind the coach that, he wouldn't listen. Remember coaches the game is for the players not your parents.
Third, there is nothing wrong with the 2 man system if handled by proper officials. The problem is a lack of human capital, and the question you have to ask is in this tough economic situation the state is in why can't they find people willing to be paid to go out and do games? Is it the players? Is it the fans? Is it the coaches? I remind coaches about sportsmanship before every game and its like talking to a wall. If a referee makes a call from 40 yards away you go bonkers? Really? You do remember you are an adult and the game is an extension of the classroom, would you like a perfect stranger to walk into your classroom full of 22 kids and "go bonkers" on you for something?
Again the culture needs to change in South Carolina.